FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436622
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24470.5604390067380939No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21730.4976844959713437No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19670.4505040973656847No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16250.37217547443784327No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13180.3018629386517399No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12260.28079208102202824No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11290.25857606808635386No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9200.2107085762971174No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9100.20841826568519223No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9080.2079602035628072No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7750.17749907242420218No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7350.16833782997650143No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6830.15642821479449043No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6360.14566375491844202No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6320.14474763067367197No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6260.14337344430651683No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5740.13146382912450585No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5300.12138646243203502No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5290.1211574313708425No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4940.11314134422910435No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4920.11268328210671931No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4830.11062200255598664No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4780.10947684725002405No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4700.10764459876048389No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4560.10443816390378863No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4510.10329300859782603No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4460.10214785329186345No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4420.10123172904709338No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4370.10008657374113077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)