FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416342
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44451.0676318987755258No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28770.6910184415696711No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21040.5053537716588766No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15420.3703685912062679No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12260.29446945059590435No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12130.2913470175961109No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12040.2891853332116385No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11000.26420586921329103No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10220.24547127121453036No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9590.2303394805232237No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8830.2120852568321236No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8360.20079646060210116No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6220.14939640968242454No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5970.14339173083666792No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5370.12898050160685207No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5300.1272991915300402No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5010.12033376406896254No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4540.10904496783894009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)