FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419542
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13640.3251164364950351No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12310.29341520038518193No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12210.29103164879797494No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG9390.22381549403873746No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9370.22333878372129606No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9100.21690319443583717No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8320.19831149205562257No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8010.19092248213528087No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7490.17852801388180445No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6830.16279657340623824No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6820.16255821824751754No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6760.16112808729519332No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6250.14897197420043762No Hit
GGTGGAGTGCACAGTCGGTTCTGCGCTGGCGATGGTGTTAATCG6080.1449199365021857No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5980.14253638491497872No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5950.14182131943881662No Hit
CTCCAGGGTCGCGACGGTGTTTTCGATTGCTTCCGTAGTCGGGG5550.13228711308998858No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG5450.1299035615027816No Hit
ACGCAGCTGTTGCGCCTGAACGGTACCGTGACCGTAAGAGCCTA5040.12013099999523291No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4790.11417212102721538No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4490.10702146626559439No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4440.10582969047199088No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG4240.10106258729757688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)