FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419542
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32720.779898079334131No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22400.5339155555343684No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18000.42903928569726035No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17730.42260369641180145No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10030.23907022419686227No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9990.23811680356197948No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9460.22548398014978235No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCAC8970.21380457737246805No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8840.21070596030909897No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7430.17709788292948025No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7210.17185406943762482No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7060.16827874205681434No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6810.16231986308879684No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6310.1504021051527618No Hit
ACCATGACCCGTCACCCGCACCCACATCTGT6240.14873361904171692No Hit
ACCGTTCCTGCCAAATCCTGCCAGGACCAGC6060.1444432261847443No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5810.1384843472167268No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC5280.12585152380452969No Hit
TTCCCGCGTGGTTCCAACTCTAGCAACGATG5070.120846065471395No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4890.11655567261442239No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4810.1146488313446568No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4570.10892830753535998No Hit
ACCGTCCCGGCAAAATCCTGCCAGGCTCAGC4520.1077365317417565No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG4310.10273107340862178No Hit

[OK]Adapter Content

Adapter graph