FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401221
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41591.0365858217790196No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31280.7796202093110779No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17960.4476335984407596No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16430.409500001246196No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9900.24674680537658797No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9820.24475289179778725No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCAC8640.21534266651047676No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8560.21334875293167604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7670.19116646436751816No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7600.1894217899860675No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7460.1859324412231663No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6790.16923341500071032No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6500.16200547827755776No Hit
ACCATGACCCGTCACCCGCACCCACATCTGT6360.1585161295146565No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6310.15726993352790608No Hit
ACCGTTCCTGCCAAATCCTGCCAGGACCAGC5770.14381101687100126No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5280.13159829620084693No Hit
TTCCCGCGTGGTTCCAACTCTAGCAACGATG5190.12935514342469612No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC5070.12636427305649506No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4990.12437035947769433No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4340.10816981164993855No Hit
ACCGTCCCGGCAAAATCCTGCCAGGCTCAGC4170.10393274529498706No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4100.10218807091353643No Hit

[OK]Adapter Content

Adapter graph