FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497747
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38980.7831287782749068No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25120.5046740613203093No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18030.3622322183760023No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13880.27885652751297346No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13230.2657976843657521No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11860.2382736611169932No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11190.22481300741139576No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9500.19086001522862014No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8470.17016677147225398No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8170.16413961309661335No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8030.16132693918798102No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7600.15268801218289613No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7270.14605813796969144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7230.14525451685293936No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6630.1332002001016581No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6550.13159295786815392No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6410.1287802839595216No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5830.11712777776661637No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5610.1127078616244799No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5580.11210514578691584No Hit

[OK]Adapter Content

Adapter graph