FastQCFastQC Report
Wed 31 May 2023
EGAF00007935323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470965
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50701.0765131166859534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36840.7822237321244677No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16100.34185130529869523No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12610.2677481341500961No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11530.24481649379465564No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11470.24354251377490896No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10680.22676844351491088No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8510.1806928328007389No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7920.16816536260656312No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7670.16285711252428525No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7040.149480322316945No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6640.14098712218530038No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6450.13695285212276923No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6420.13631586211289584No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6310.1339802320766936No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6160.13079528202732685No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5530.11741849181998662No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5330.11317189175416432No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5040.10701432165872199No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC4970.10552801163568418No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4850.1029800515961908No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4720.1002197615534063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)