FastQCFastQC Report
Wed 31 May 2023
EGAF00007935326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474243
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13230.27897090731966523No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12810.27011468803967587No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11040.23279204964543493No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8840.18640232960739536No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7390.15582728685505112No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6150.12968035374270154No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5910.12461965701127903No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5640.11892637318842872No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5400.11386567645700622No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5020.10585290663225394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)