FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474243
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27420.5781846015650205No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13410.28276642986823214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12760.2690603762206295No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11600.2446003420187541No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7960.16784644159217954No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7590.1600445341312365No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7490.15793591049314382No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5710.12040240973509361No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5710.12040240973509361No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5090.10732894317891882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)