FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433850
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34870.8037340094502708No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22140.5103146248703468No Hit
ATGTCCAACATGGACATCGATGGTATTAACA21680.49971188198686184No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15580.3591102915754293No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8370.19292382159732627No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7800.1797856401982252No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6830.1574276823787023No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6550.15097383888440705No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4870.11225077791863548No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG4430.1021090238561715No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)