FastQCFastQC Report
Sun 21 May 2023
EGAF00007935330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416219
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9200.22103748267138212No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7830.18812211840401327No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7630.1833169557372441No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7540.18115463253719796No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6470.15544701226998286No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6450.15496649600330595No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6440.1547262378699675No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6320.15184314026990597No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5920.14223281493636764No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5140.12349268053596783No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4580.11003822506901415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)