FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416219
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35650.8565202453516058No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10050.2414594240051511No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8250.19821296000422853No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8120.19508960427082858No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7940.19076495787073633No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7800.18740134400399788No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7710.18523902080395177No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7480.1797130837371672No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7320.17586895360375188No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6470.15544701226998286No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6280.15088210773655217No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6110.14679771946979836No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6030.14487565440309066No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5990.14391462186973686No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5550.13334326400284466No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4250.102109706668845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)