FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492707
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24950.5063861483599786No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11590.23523108054076766No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11410.23157779369889203No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10900.22122681431357782No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10390.21087583492826367No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8350.1694719173870069No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7270.14755219633575328No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6400.12989464326668793No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5440.11041044677668473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)