FastQCFastQC Report
Wed 31 May 2023
EGAF00007935337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446242
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39050.8750857158223565No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31360.7027576964965199No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12580.2819098157501983No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9420.2110962213328194No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9380.21019984671994119No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9200.20616616096198925No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7720.17300030028549532No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7110.15933058743910256No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6820.1528318714957355No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6000.1344561919317321No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5790.1297502252141215No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5100.1142877631419723No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5060.11339138852909408No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4710.1055481106664097No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4640.10397945509387284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)