FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488412
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG46140.9446942335569151No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT20930.4285316495090211No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18030.36915554900371No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16620.3402864794476794No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13740.2813198692906808No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA12730.26064060670090006No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG11680.23914236341449432No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9760.19983128997649527No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9580.19614587684168286No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9280.19000352161699546No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8270.16932425902721474No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG8030.16441037484746485No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG8000.16379613932499612No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7830.16031547136433993No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG7310.1496687223082152No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG7150.14639279952171527No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5900.12079965275218463No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA5650.1156810233982785No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5440.11138137474099735No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5190.10626274538709123No Hit

[OK]Adapter Content

Adapter graph