FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488412
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG45420.9299525810176654No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38470.787654684979075No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21570.4416353406550208No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19180.39270124403167816No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18190.3724314717902099No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13060.2673971974480562No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12450.2549077418245252No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10550.2160061587348386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9760.19983128997649527No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8700.17812830151593326No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT8690.17792355634177703No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG8140.16666257176318353No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT8120.16625308141487105No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT8050.16481986519577735No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7810.15990598101602746No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6100.12489455623530953No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6070.1242803207128408No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5950.12182337862296586No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC5750.11772847513984094No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.11650000409490348No Hit

[OK]Adapter Content

Adapter graph