FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462150
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG42610.9219950232608459No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT19820.4288650870929352No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16690.36113815860651305No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15750.34079844206426485No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12590.2724223736881965No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12120.26225251541707234No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11540.2497024775505788No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9230.19971870604782No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9080.19647300659958888No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8860.19171264740884994No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8230.17808070972627935No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7850.1698582711240939No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG7640.16531429189657038No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7300.15795737314724656No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG6590.14259439575895272No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6450.13956507627393705No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5510.11922535973168885No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5320.11511414043059612No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5310.11489776046738072No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA4850.10494428215947202No Hit

[OK]Adapter Content

Adapter graph