FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445138
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12720.2857540807569787No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11080.24891157348956952No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8680.19499570919579995No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6140.13793475281822715No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5720.12849947656681748No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG5420.12175999353009627No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5020.11277401614780136No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4780.10738242971842439No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)