FastQCFastQC Report
Wed 31 May 2023
EGAF00007935343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445138
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37790.8489502131923133No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13340.2996823456995359No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11450.2572236025681923No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11140.2502594700969138No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7640.17163216800183315No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6000.13478966073442392No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5940.1334417641270797No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5590.12557903391757164No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5270.11839025201173568No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4940.11097682067134236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)