FastQCFastQC Report
Sun 21 May 2023
EGAF00007935347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436221
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37130.8511740608544751No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18370.4211168192269515No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15950.365640352023401No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14940.3424869504219192No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11120.2549166592163146No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8730.20012791681280817No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7230.16574167681060747No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6390.14648538240937506No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6250.14327600000916965No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6150.14098358400902294No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6070.13914965120890557No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6040.13846192640886157No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5290.1212688064077612No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5220.1196641152076585No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5010.1148500416073504No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA4900.11232838400718902No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4770.10934824320699829No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4640.10636810240680755No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4420.1013247872064848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)