FastQCFastQC Report
Wed 31 May 2023
EGAF00007935349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439431
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39230.8927453911990733No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20390.46400913909123387No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19230.4376113656068871No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10010.22779457980888923No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9050.2059481465804643No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7990.18182604322407842No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4970.11310080535965829No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)