FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484164
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15140.3127039598152692No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13590.28069001412744443No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7430.15346039771647624No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7220.14912302442973868No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6430.1328062392082022No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5980.12351186787947885No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5190.10719508265794235No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5090.10512966680711494No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5090.10512966680711494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)