FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484164
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34570.714014259631034No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12220.25239381697110896No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9690.2001387959451756No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8930.1844416354788873No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7390.1526342313761453No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6920.14292677687725647No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6000.12392495104964432No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5590.11545674606125197No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5590.11545674606125197No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5570.11504366289108649No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5140.10616237473252865No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4900.10120537669054286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)