FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485415
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT92091.8971395609942008No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23280.4795896294922901No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14570.30015553701471936No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14180.2921211746649774No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13170.27131423627205586No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11810.24329697269346848No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11650.24000082403716408No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11560.23814674041799286No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8970.1847903340440654No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8720.17964010176858977No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8330.1716057394188478No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8030.16542546068827704No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7140.1470906337875838No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7060.1454425594594316No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6410.13205195554319502No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6270.12916782546892866No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5230.10774285920295006No Hit
GAAAAAGCTATCCCTACCCTGGCAGACGCAG5090.1048587291286837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)