FastQCFastQC Report
Wed 31 May 2023
EGAF00007935366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401733
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17310.43088319854231544No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16340.40673780844491236No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15990.3980255542860556No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15770.39254928024334573No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14230.354215361944376No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13210.32882536410999347No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11550.28750438724227284No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11510.2865087010526892No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10790.2685863496401839No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10120.25190860596465814No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9010.22427831420371241No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8330.20735164898079075No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8250.20536027660162348No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7970.19839047327453807No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7960.19814155172714218No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7900.1966480224427667No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7880.1961501793479749No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7390.18395302352557544No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7010.17449400472453097No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6700.16677743675525786No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6320.1573184179542134No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT6280.15632273176462974No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5960.1483572422479607No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5820.144872340584418No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5810.1446234190370221No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5720.14238312511045895No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5340.13292410630941445No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5210.12968812619326767No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5040.12545645988753723No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4970.12371400905576589No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4790.11923342120263955No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG4750.11823773501305594No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4670.11624636263388868No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4380.10902763775940737No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4280.10653842228544828No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4250.10579165764326058No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4100.10205783443232197No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4090.10180891288492605No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4090.10180891288492605No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4040.10056430514794654No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4040.10056430514794654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)