FastQCFastQC Report
Sun 21 May 2023
EGAF00007935367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401733
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37160.9249924701231913No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21980.5471295611762041No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18190.45278829471315524No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16490.410471631655851No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14470.36018947908187776No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13120.32658507018343025No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11660.29024252426362784No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11470.2855130148631056No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10250.2551445860808049No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9000.22402939265631652No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8960.2230337064667329No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8820.21954880480319017No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8700.2165617462344393No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8480.21108547219172935No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8290.20635596279120708No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8110.20187537493808078No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8080.20112861029589307No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8000.19913723791672577No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7730.19241635613703628No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7420.18469978816776317No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7040.1752407693667187No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7030.17499184781932278No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6840.17026233841880056No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6460.16080331961775607No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6320.1573184179542134No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6120.15233998700629522No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5970.14860616379535663No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5750.14312988975264668No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5710.14213420356306303No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5670.1411385173734794No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5600.13939606654170805No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5380.1339197924989981No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5230.13018596928805948No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5160.12844351845628812No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4930.12271832286618227No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4850.120726950487015No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4770.11873557810784775No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4730.11773989191826412No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4720.11749097037086821No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4590.11425499025472141No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT4340.10803195156982373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)