FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411769
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA54711.3286575725710288No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37530.9114333521950414No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35780.868933795404705No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26410.6413790256187328No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23510.5709511886518898No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11270.273697145729766No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10160.2467402839941812No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10080.24479744711233725No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9980.2423689010100323No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9470.22998331588827717No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7760.1884551775388628No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7720.18748375909794082No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6620.16076975197258658No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6320.15348411366567177No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5370.1304129256937749No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5350.12992721647331393No Hit
ACTATCTACCAGTGCTATAACGCAGTTAAAA5170.12555583348916505No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4940.11997017745386368No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4710.11438452141856235No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4710.11438452141856235No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4440.10782744694233903No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4430.10758459233210854No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT4250.10321320934795965No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4200.10199893629680719No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4180.10151322707634619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)