FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381033
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG14380.37739513375481915No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG12570.32989268646022785No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG12060.31650801899048114No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11610.3046980182818811No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10930.28685179498888547No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10500.2755666832006677No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9970.2616571268105387No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8880.23305068064970752No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT8660.22727690252550303No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG8400.22045334656053414No Hit
CGGAGCCTGAGTGGTGGTGGTGGAGCGGTCAGATTCAACGTTAG8020.21048045707327184No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG7590.19919534528505403No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7560.1984080119044807No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG7450.19552112284237846No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7440.19525867838218736No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7320.19210934485989403No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7000.18371112213377844No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6730.1766251217086184No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6680.17531289940766287No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6050.1587788984156228No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5430.14250734188377384No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5240.1375208971401427No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5110.13410911915765827No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC5030.13200956347612938No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4940.12964756333440935No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT4920.1291226744140271No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT4860.12754800765288046No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4850.12728556319268935No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT4710.12361134075001379No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4590.12046200722772044No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4490.11783756262580931No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4370.11468822910351596No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT4270.11206378450160485No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4200.11022667328026707No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4140.1086520065191204No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA3900.10235333947453369No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)