FastQCFastQC Report
Wed 31 May 2023
EGAF00007935371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381033
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33310.8742024968965943No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC16590.4353953594570549No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG14520.3810693561974947No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC14240.3737209113121436No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG12520.3285804641592723No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12480.32753068631850785No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11490.30154868475958774No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11380.2986617956974855No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11000.28868890621022325No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC9890.2595575711290098No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9210.24171134783601422No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9000.23620001417200084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8900.2335755695700897No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG8410.22071579102072525No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG8260.21677912411785855No Hit
AAAGCAAAAGTAGTTGCCGAAAAAGGTTTCA8260.21677912411785855No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7990.20969312369269852No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7620.19998267866562736No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7420.19473378946180514No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7150.1876477890366451No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7070.18554823335511622No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6420.16848934344269392No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6350.16665223222135617No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5720.15011823122931608No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5700.14959334230893387No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5490.14408200864492052No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC5430.14250734188377384No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5310.1393580083614805No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5280.13857067498090717No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5240.1375208971401427No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5140.1348964525382316No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4910.12886022995383603No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4760.12492356305096933No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4460.11705022924523598No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4380.11495067356370708No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC4270.11206378450160485No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4040.10602756191720927No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA4010.10524022853663592No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG3980.1044528951560626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)