FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438116
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8600.1962950451478604No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8250.18830629331044746No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7220.16479653790320373No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6940.15840553643327338No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6730.15361228533082563No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5730.13078728008107443No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5670.12941777976608934No Hit
ACGCGCGCGGATAAATTTACGAACGCCTTCGGCAGAATCAGTGG5460.1246245286636416No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4800.1095600251988058No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4760.10864702498881575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)