FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438116
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39220.8951967058952423No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10660.24331455596234788No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8960.20451204703777082No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8730.19926229583032803No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8380.1912735439929151No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7560.17255703968811914No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6980.15931853664326343No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6510.14859078417588037No Hit
TTCGGTGCACTGTACAGCGGTCGTATCGCTG5390.123026778296159No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5040.11503802645874608No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4690.10704927462133318No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4690.10704927462133318No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4670.10659277451633814No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4390.10020177304640779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)