FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395169
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15440.3907189076066189No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6110.15461739154640167No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5630.14247068975552232No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5340.1351320574235327No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4980.1260220310803732No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4960.12551591850575322No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4490.11362227300218386No Hit
TACCAGACCCAGGATGTGTTCGGACAGATAGCGCGGGTTATCGT4120.10425919037171437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)