FastQCFastQC Report
Wed 31 May 2023
EGAF00007935381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389934
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34420.8827134848461534No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22170.5685577559279262No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11400.2923571681361461No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9840.25235039775962087No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9410.24132289054045042No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7820.20054675919514584No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7690.19721286166376875No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7680.196956408007509No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6960.178491744756805No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5380.1379720670677602No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4780.12258484769217355No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4720.12104612575461488No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4580.11745577456697799No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4450.11412187703560091No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4180.10719762831658691No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)