FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393129
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35490.9027571102615172No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21650.5507098178969244No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11120.28285880715999073No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9650.24546650081779775No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9130.23223929041103555No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8250.20985478049189962No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8240.20960041106100033No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8100.20603923902841054No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7610.1935751369143462No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5290.13456142894571502No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5190.13201773463672228No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5140.13074588748222593No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4900.12464102114064342No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4700.11955363252265795No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA3960.1007302946361118No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3950.10047592520521254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)