FastQCFastQC Report
Sun 21 May 2023
EGAF00007935386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399019
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20450.5125069232292196No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14560.36489490475390896No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13090.32805455379317777No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11510.28845744187620137No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11270.2824426906989392No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10660.2671551981233976No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10610.26590212496146803No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9930.24886032995922502No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9430.23632959833992864No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9140.2290617740007368No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8310.2082607595127049No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7910.19823617421726786No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7200.18044253531786708No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7120.17843761825877966No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6870.17217225244913148No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5950.14911570626962625No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5510.1380886624446455No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5510.1380886624446455No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5460.13683558928271586No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5330.1335775990616988No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4490.112525969941281No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG4450.11152351141173729No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4320.10826552119072023No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4090.10250138464584393No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4010.10049646758675651No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)