FastQCFastQC Report
Wed 31 May 2023
EGAF00007935387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399019
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21270.5330573230848656No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19180.480678864916207No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14180.3553715487232437No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12570.31502259290910956No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12340.30925845636423327No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11610.29096358820006063No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11560.28971051503813106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11480.2877055979790436No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11010.2759267102569051No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10980.27517486635974725No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9530.23883574466378793No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8820.22104210576438715No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8550.21427551068996714No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8440.21151874973372198No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7610.19071773524569005No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7270.18219683774456855No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6300.1578872184031337No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5980.14986755016678405No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5900.14786263310769662No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5490.13758743317987362No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5450.13658497465032995No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5250.1315726820026114No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5240.13132206737022548No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4820.12079625281001657No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4690.11753826258899952No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4690.11753826258899952No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4610.1155333455299121No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4080.102250770013458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)