FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385067
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT63291.643610073052222No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC18300.4752419708777953No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16730.43446984550740525No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7510.1950309946061335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7240.1880192278226906No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7230.18775953275663715No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6830.17737173011449955No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6540.1698405731989498No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6310.16386758667972068No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5930.15399917416968995No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5810.15088283337704866No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5600.14542923698992644No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5310.13789808007437665No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4920.1277699724982925No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4830.12543271690381155No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4810.12491332677170466No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4750.12335515637538404No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4720.1225760711772237No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4590.11920003531852898No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4440.11530460932772738No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4290.11140918333692577No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4280.11114948827087234No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4100.10647497708191041No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4060.10543619681769666No Hit

[OK]Adapter Content

Adapter graph