FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375189
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33670.8974143698242752No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29000.7729437696734179No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15250.40646180991446973No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8050.21455852916796603No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6640.1769774700217757No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5950.15858673895023576No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5460.14552665456609867No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5330.1420617342192868No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5270.14046254021306595No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5000.13326616718507206No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4510.12020608280093499No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4290.11434237144479183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)