FastQCFastQC Report
Sun 21 May 2023
EGAF00007935399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517548
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32120.6206187638634484No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21470.4148407490706176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14180.27398424880397565No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14020.2708927481122524No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13980.27011987293932155No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13930.26915377897315806No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12790.2471268365446297No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9620.18587647908986218No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9110.17602232063499423No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9110.17602232063499423No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8080.15612078493202564No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7600.1468462828568558No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6930.13390062371026454No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6910.13351418612379914No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6840.1321616545711702No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6240.12056852697720792No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6010.1161244947328557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)