FastQCFastQC Report
Wed 31 May 2023
EGAF00007935404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489780
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12050.2460288292702846No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9550.19498550369553677No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7490.15292580342194456No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6920.14128792519090205No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6660.13597941933112825No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5460.11147862305524929No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA5170.10555759728857854No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5080.10372003756788763No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4990.1018824778471967No Hit
CTGTGGCAGGTCGGTGCCTACCTGGTAGCGCAGCATCAGCTTAA4950.10106578463800074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)