FastQCFastQC Report
Wed 8 May 2024
EGAF00007935405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489780
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29100.5941443096900649No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12160.24827473559557353No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11830.24153701661970683No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7680.15680509616562538No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7140.14577973784147985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6970.142308791702397No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5740.11719547551962105No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5380.10984523663685737No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5350.1092327167299604No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5280.10780350361386745No Hit
GGCGAAATTACTGCAGCAGATATCGGTCGTA5140.10494507738168157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)