FastQCFastQC Report
Wed 31 May 2023
EGAF00007935409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399749
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56071.4026301504193883No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19570.48955719714120605No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14180.3547225884242362No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10470.26191435125541274No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9110.2278930028592942No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9030.22589174707128723No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8370.2093813868202297No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8130.20337761945620875No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8050.20137636366820177No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7800.19512243933068No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7180.17961270697362594No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7070.17686098026511637No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5840.14609167252450914No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5820.14559135857750738No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5630.1408383760809908No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5390.1348346087169699No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4900.12257691701542718No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4470.11182016715488968No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4290.10731734163187401No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4230.10581639979086878No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4140.10356498702936093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)