FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457205
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12080.2642140833980381No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11560.2528406294769305No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6760.1478549009743988No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6270.137137607856432No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5630.12313951072276112No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5370.11745278376220733No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5050.11045373519537188No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4660.10192364475454117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)