FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460882
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30280.6570011412899615No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25820.5602301673747293No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18140.3935931539960337No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11760.25516292673612767No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10710.23238052256325917No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10170.2206638575600696No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9000.19527775005315895No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8870.19245707144127996No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8540.18529688727266416No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8490.18421201088347994No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8480.1839950356056431No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8420.18269318393862205No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8010.17379719754731146No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7090.1538354719863219No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6940.15058084281876924No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6830.14819411476256394No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6100.1323549194804744No Hit
TTCCAGAACGGTGCTAAATCCCTGTCTGTTG6060.13148701836912702No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5650.12259103197781644No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5180.11239319391948481No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4960.10761973780707426No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4820.10458208391735846No Hit

[OK]Adapter Content

Adapter graph