FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464492
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30220.6506032396682827No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26180.5636264994876122No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17500.3767556814756766No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12490.2688959120932115No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10890.23444967835829247No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10470.22540754200287624No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9520.20495509072276807No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9420.20280220111433567No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9080.19548237644566538No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8600.18514850632518967No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8320.17912041542157883No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7960.17137001283122208No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7680.16534192192761124No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7170.1543621849246058No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6980.15027169466858417No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6840.14725764921677875No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6120.13175684403606522No Hit
TTCCAGAACGGTGCTAAATCCCTGTCTGTTG6010.1293886654667895No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5550.11948537326800031No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4890.10527630185234622No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4870.10484572393065973No Hit

[OK]Adapter Content

Adapter graph