FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481546
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30390.6310923567011251No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20480.42529685637509185No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19380.40245376350338286No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14470.30049050350329976No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14330.2975832007741732No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12320.25584264016314123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10280.21347908611015357No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10010.20787214513255226No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9460.19645059869669773No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8780.18232941401236852No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8480.1760994795928115No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7670.15927865666000757No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7210.14972609055002015No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6380.1324899386559124No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6330.13145161625265292No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6110.1268829976783111No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5980.12418335942983641No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5940.1233527015072288No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5730.11899174741353889No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5520.11463079331984899No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5500.1142154643585452No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5430.11276181299398189No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5240.10881618786159578No Hit

[OK]Adapter Content

Adapter graph