FastQCFastQC Report
Sun 21 May 2023
EGAF00007935430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479384
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16370.3414798992039784No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15340.31999399229010567No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG13700.2857834220583082No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12270.2559534736244848No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12170.2538674632444971No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10300.21485906913872804No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10180.21235585668274284No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10140.21152145253074778No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9860.20568062346678237No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9310.1942075663768503No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8080.16854963870300219No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7760.1618744054870417No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7410.15457336915708492No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7010.14622932763713434No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6810.14205730687715903No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6750.14080570064916642No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6690.13955409442117384No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6490.13538207366119853No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6430.13413046743320595No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6180.1289154414832368No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6070.1266208300652504No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5960.12432621864726398No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5900.12307461241927141No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5870.1224488093052751No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5070.10576072626537389No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5010.1045091200373813No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4950.10325751380938872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)