FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479384
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29540.616207466248352No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25360.5290122323648683No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21110.4403567912153931No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16940.35337015836990804No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG14000.29204145319827113No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12330.2572050798524773No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11170.2330073594446206No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11040.23029554595063664No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10840.22612352519066134No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10440.21777948367071076No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10070.21006124526475645No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9320.19441616741484904No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8360.17439046776696762No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8260.17230445738697994No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7970.16625502728501576No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7790.162500208601038No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7750.16166580444904294No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7480.15603357642307628No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7350.15332176292909233No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7330.1529045608530948No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6750.14080570064916642No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6710.13997129649717135No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6680.1393454933831751No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6640.13851108923118002No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6160.12849823940723928No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6060.12641222902725163No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5340.11139295429134055No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5340.11139295429134055No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5230.10909834287335413No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5090.10617792834137142No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4990.10409191796138377No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4910.10242310965739365No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4860.10138010446739984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)