FastQCFastQC Report
Sun 21 May 2023
EGAF00007935436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513277
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13010.2534693742365234No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8640.16833016090726838No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6460.12585796753020298No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6070.118259731100361No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5680.11066149467051903No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5670.11046666809539489No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5290.10306325824067707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)