FastQCFastQC Report
Sun 21 May 2023
EGAF00007935437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513277
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30130.5870124708490737No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13330.2597038246404963No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11810.23009018522162494No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7200.14027513408939032No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6920.13481998998591405No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6530.12722175355607204No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6280.12235108917796823No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5720.11144080097101564No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5160.10053051276406307No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5150.10033568618893893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)